GitHub

VANER2: Towards more general biomedical named entity recognition using multi-task large language model encoders

For VANER2 prediction, run run_VANER2_NER.py --model_names [folder names of trained models in the results folder] Example: python run_VANER2_NER.py --model_names VANER2 The model predictions should be ...
GitHub

MIMIC-III corpus parsing and section prediction with MedSecId

This repository contains the a Python package to automatically segment and identify sections of clinical notes, such as electronic health record (EHR) medical documents. It also provides access to the ...
IEEE

MedBot: A Novel Sequential Pipeline for Context Recognition Based on SciSpacy and Med7 Entity Recognizer

Abstract: Recent studies have shown the dependency of AI in various domains of life, this dependency makes it important for one to be able to communicate with AI agents without having to memorize ...
IEEE

Mapping Extracted Free-Text Primary Diagnoses to ICD-10 and SNOMED-CT Using SciSpacy - A Performance Evaluation

Abstract: Accurate extraction and standardization of clinical diagnoses from unstructured electronic health records (EHRs) remain a critical challenge in healthcare data science. This study is among ...